Download fa file in r

Your email address will not be published. Post Comment. On this website, I provide statistics tutorials as well as code in Python and R programming. YouTube privacy policy If you accept this notice, your choice will be saved and the page will refresh. Leave new. Hey Victor, Thanks a lot for this hint. Hey Fernando, Unfortunately, it seems like I have missed answering your question.

Regards, Joachim. Leave a Reply Cancel reply Your email address will not be published. I can download the file using download. My first guess would be you are behind a web proxy I run the code, and can get the file "myfile. The download works fine for me too, and I can open the PDF. Add a comment. Active Oldest Votes. Improve this answer. Gregor Thomas k 16 16 gold badges silver badges bronze badges.

Troy Troy 8, 27 27 silver badges 30 30 bronze badges. Can you specify your operating system and version of R? The mode parameter is only used when the internal method is used. The default method is auto so I suspect that it may depend on the OS. I have no problem in downloading the file using R 3. Returns a FaFile instance. The instance may be re-opened with open.

Accessors: path Returns a character 1 vector of the fasta path name. Values of end param greater than the width of the sequence cause an error; use seqlengths FaFile file to discover sequence widths. Most methods do not percent-encode special characters such as spaces in URLs see URLencode , but it seems the "wininet" method does. The remaining details apply to the "internal" , "wininet" and "libcurl" methods only.

The timeout for many parts of the transfer can be set by the option timeout which defaults to 60 seconds. The level of detail provided during transfer can be set by the quiet argument and the internet.

For the "internal" method setting option internet. Using 2 the default gives only serious messages, and 3 or more suppresses all messages. For the "libcurl" method values of the option less than 2 give verbose output. If the file length is known, the full width of the bar is the known length. Otherwise the initial width represents Kbytes and is doubled whenever the current width is exceeded. In non-interactive use this uses a text version. On Windows, if mode is not supplied missing and url ends in one of.